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Gene id 317
Gene Summary     SNPs    Protein Summary    Gene ontology    KEGG pathways    Diseases    PubMed    

Gene Summary

Gene Symbol APAF1   Gene   UCSC   Ensembl
Aliases APAF-1, CED4
Gene name apoptotic peptidase activating factor 1
Alternate names apoptotic protease-activating factor 1,
Gene location 12q23.1 (98645140: 98735432)     Exons: 28     NC_000012.12
Gene summary(Entrez) This gene encodes a cytoplasmic protein that initiates apoptosis. This protein contains several copies of the WD-40 domain, a caspase recruitment domain (CARD), and an ATPase domain (NB-ARC). Upon binding cytochrome c and dATP, this protein forms an oligo
OMIM 602233

SNPs


rs11204546

Strand:    Allele origin:   Allele change:   Mutation type: snv

NC_000001.11   g.247896410T>A
NC_000001.11   g.247896410T>C
NC_000001.11   g.247896410T>G
NC_000001.10   g.248059712T>A
NC_000001.10   g.248059712T>C
NC_000001.10   g.248059712T>G
NG_053132.1   g.5824T>A
NG_053132.1   g.5824T>C
NG_053132.1   g.5824T>G
NM_001001957.2   c

rs36065902

Strand:    Allele origin:   Allele change:   Mutation type: snv

NC_000017.11   g.41841870A>T
NW_003571052.1   g.128512A>T
NG_051246.1   g.11186A>T
NM_152467.5   c.242A>T
NM_152467.4   c.242A>T
NM_152467.3   c.242A>T
NM_001329596.2   c.-23A>T
NM_001329596.1   c.-23A>T
NM_001329595.1   c.242A>T
NC_000017.10   g.39998122A>T
NP_689680.2  

rs61752339

Strand:    Allele origin:   Allele change:   Mutation type: snv

NC_000017.11   g.41845328T>C
NW_003571052.1   g.131970T>C
NG_051246.1   g.14644T>C
NM_152467.5   c.887T>C
NM_152467.4   c.887T>C
NM_152467.3   c.887T>C
NM_001329596.2   c.623T>C
NM_001329596.1   c.623T>C
NM_001329595.1   c.887T>C
NC_000017.10   g.40001580T>C
NP_689680.2  

Protein Summary

Gene ontology

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GO accessionTerm nameEvidence codeGo category

KEGG pathways

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Pathway idPathway name
hsa04210Apoptosis
hsa04215Apoptosis - multiple species
hsa04115p53 signaling pathway
hsa05200Pathways in cancer
hsa05222Small cell lung cancer
hsa05010Alzheimer disease
hsa05012Parkinson disease
hsa05014Amyotrophic lateral sclerosis
hsa05016Huntington disease
hsa05134Legionellosis
hsa05152Tuberculosis
hsa05162Measles
hsa05164Influenza A
hsa05161Hepatitis B
hsa05160Hepatitis C
hsa05168Herpes simplex virus 1 infection
hsa05169Epstein-Barr virus infection
hsa01524Platinum drug resistance
Associated diseases References
Cancer GAD: 19692168
Autism GAD: 19058789
Female infertility INFBASE: 22999554
Chronic obstructive pulmonary disease (COPD) GAD: 19625176
Associated with spermatogenesis and epigenetic regulation MIK: 21674046
Cryptorchidism MIK: 28606200
Male infertility MIK: 10656767
Teratozoospermia MIK: 17327269

PubMed references

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PMID Condition Mutation Ethnicity Population details Infertility_type Associated_genes Abstract
10656767 Male infer
tility


Male infertility
Show abstract
17327269 Teratozoos
permia

13 (5 controls,
8 cases)
Male infertility GSE6967 analyzed by GEO2R (cutoff 1.5 fold)
Show abstract
21674046 Associated
with sper
matogenesi
s and epig
enetic reg
ulation

18
Male infertility GSE26881
Show abstract
28606200 Cryptorchi
dism

Monozgotic twin
s (1 control, I
cwith cryptorc
hidism)
Male infertility MeDIP-Seq
Show abstract