• Gene id: 3007

Gene Summary

• Gene Symbol: H1-3   Gene   UCSC   Ensembl
• Aliases: H1.3, H1D, H1F3, H1s-2, HIST1H1D
• Gene name: H1.3 linker histone, cluster member
• Alternate names: histone H1.3, H1 histone family, member 3, histone 1, H1d, histone H1c, histone H1s-2, histone cluster 1 H1 family member d, histone cluster 1, H1d,
• Gene location: 6p22.2 (26234986: 26234211)     Exons: 1     NC_000006.12
• Gene summary(Entrez): Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in
• OMIM: 612384

Protein Summary

• Protein general information: P16402  
  • Name: Histone H1.3 (Histone H1c) (Histone H1s 2)
  • Length: 221  
  • Mass: 22350
• Sequence:

  MSETAPLAPTIPAPAEKTPVKKKAKKAGATAGKRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVE
  KNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEGKPKAKKAGAAKPRKPAGAAKKPKKVAGAATPKK
  SIKKTPKKVKKPATAAGTKKVAKSAKKVKTPQPKKAAKSPAKAKAPKPKAAKPKSGKPKVTKAKKAAPKKK

• Structural information:
  • Protein Domains: (37..11-)
    (/note="H15-)
    (/evidence="ECO:0000255|PROSITE-ProRule:PRU00837"-)
  • Interpro: IPR005818  IPR005819  IPR036388  IPR036390  
  • Prosite: PS51504
  • CDD: cd00073
  • STRING: ENSP00000244534
• Other Databases: GeneCards:  H1-3  Malacards:  H1-3

Gene ontology

GO accession	Term name	Evidence code	Go category
GO:0031490	chromatin DNA binding	IDA	molecular function
GO:0005719	nuclear euchromatin	IDA	cellular component
GO:0000790	nuclear chromatin	IDA	cellular component
GO:0003723	RNA binding	HDA	molecular function
GO:0000786	nucleosome	IEA	cellular component
GO:0006334	nucleosome assembly	IEA	biological process
GO:0042025	host cell nucleus	IEA	cellular component
GO:0003677	DNA binding	IEA	molecular function
GO:0045910	negative regulation of DNA recombination	IBA	biological process
GO:0031492	nucleosomal DNA binding	IBA	molecular function
GO:0030261	chromosome condensation	IBA	biological process
GO:0003690	double-stranded DNA binding	IBA	molecular function
GO:0031936	negative regulation of chromatin silencing	IBA	biological process
GO:0016584	nucleosome positioning	IBA	biological process
GO:0006355	regulation of transcription, DNA-templated	IBA	biological process
GO:0005719	nuclear euchromatin	IBA	cellular component
GO:0005634	nucleus	IBA	cellular component
GO:0000790	nuclear chromatin	IBA	cellular component
GO:0005634	nucleus	IEA	cellular component
GO:0005694	chromosome	IEA	cellular component
GO:0003677	DNA binding	IEA	molecular function
GO:0006357	regulation of transcription by RNA polymerase II	IEA	biological process
GO:0080182	histone H3-K4 trimethylation	IEA	biological process
GO:0000122	negative regulation of transcription by RNA polymerase II	IEA	biological process
GO:0003677	DNA binding	IEA	molecular function
GO:0016584	nucleosome positioning	IEA	biological process
GO:0098532	histone H3-K27 trimethylation	IEA	biological process
GO:0005634	nucleus	IEA	cellular component
GO:0005694	chromosome	IEA	cellular component

Diseases

Associated diseases	References
Aberrant CpGs in Low Motility Sperm	MIK: 21674046

PubMed references

PMID	Condition	Mutation	Ethnicity	Population details	Infertility_type	Associated_genes
21674046	Aberrant CpGs in Low Motility Sperm			18	Male infertility	GSE26881